This list of F-104 colour schemes will be supplemented by four-view colour drawings showing the both colours and pattern for each scheme. Please be patient as these drawings are time consuming to make.
| User | Colours | Standard numbers | Notes |
| Canada | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Dark green overall. | 503-120 (FS14064) | - | |
| Dark green/dark grey disruptive pattern with light grey undersides. | 503-301 (FS34084), 501-302 (FS 36076), 101-327 (FS36300) | - | |
| Belgium | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Dark green/medium green/tan disruptive pattern with pale grey undersides. | FS34079, FS34102, FS30219, FS36622 | - | |
| Denmark | Light grey with white upper wing surfaces. | FS16473, FS17875 | F-104G only |
| Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | TF-104G only | |
| Dark green overall. | FS34079 | - | |
| Germany | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Dark green/dark grey upper splinter pattern with alugrey lower surfaces. | RAL6014 (FS24064), RAL7012 (FS26152), RAL9006 (FS17178) or RAL7001 (FS36320) | - | |
| Dark grey upper with alugray lower. | RAL7012 (FS26152), RAL7001 (FS36320) | Marineflieger | |
| Dark green/medium green/dark grey disruptive pattern. | FS34079, RAL6003 (FS34082), RAL7021 (FS37031) | - | |
| The Netherlands | Light grey overall. | RAL7001 (FS36320) | - |
| Dark green/dark grey disruptive pattern with light grey lower surfaces. | RAL6014 (FS24064), RAL7012 (FS26152), RAL7001 (FS36620) | - | |
| Spain | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Light grey with white upper wing surfaces. | FS16473, FS17875 | - | |
| Norway | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Light grey with white upper wing surfaces. | FS16473, FS17875 | - | |
| Dark green with light grey lower surfaces. | FS34096, FS36320 | CF-104s/CF-104Ds only | |
| USA | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Light grey with white upper wing surfaces. | FS16473, FS17875 | - | |
| Dark green/medium green/tan disruptive pattern with pale grey undersides. | FS34079, FS34102, FS30219, FS36622 | - | |
| Italy | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Dark green/dark grey disruptive pattern with silver lower surfaces. | RAL6014 (FS24064), RAL7012 (FS36152), FS17178 | - | |
| Overall medium grey. | FS35526 | - | |
| Greece | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Dark green/medium green/tan disruptive pattern with pale grey undersides. | FS34079, FS34102, FS30219, FS36622 | - | |
| Taiwan | Coming soon! | - | - |
| Turkey | Coming soon! | - | - |
| Jordan | Silver laquer overall | FS17178 | - |
| Pakistan | Natural Metal fuselage with white upper wing surfaces and grey lower wing surfaces. | Natural Metal, FS17875, FS16473 | - |
| Japan | Coming soon! | - | - |